Staining:Article Title: Single-cell transcriptomics of bronchoalveolar lavage during PRRSV infection with different virulence.
Article Snippet: .. According to the gating strategies suggested in former studies10,61–63 with modifications, the BALF cells were phenotypically classified into subpopulations as follows: monocyte/DC panel including alveolar macrophages (AMɸs and MHCII+CD172α+CD163high), monocytederived macrophages (moMɸs and MHCII+/CD172α+/CD163int), moDC (MHCII+CD172α+CD163low), cDC2 (MHCII+CD172α+CD163-), and cDC1 (MHCII+CD172α-CD163-) stained with porcine MHCII (myositis-specific antibody 3, cat.: WS0589S-100, Kingfischer Biotech), porcine CD163 (2A10/11, cat.: MCA2311GA, Bio-Rad), CD172α (Sirpα, 74-22-15, cat.: MCA6100PE, Bio-Rad), the Zombie Green live-dead fixable dye (cat.: 423112, BioLegend), rat adenomatous polyposis coli (APC) anti-mouse IgG1 (cat.: 406610, BioLegend), rat peridinin-chlorophyll-protein/cyanine 5.5 anti-mouse IgG2a (cat.: 407112, BioLegend); T cell panel including CD3+ T (CD3+), CD4+ T (CD3+CD4α+CD8α-), and CD8+ T (CD3+CD4α-CD8α+) cells stained with porcine CD3 (PPT3, cat.: MCA5951F, Bio-Rad), porcine CD4α (74-12-4, cat.: 561474, BD), and porcine CD8α (76-2-11, cat.: 559584, BD); Treg (CD4α+CD8α-CD25+FoxP3+) cell panel stained with porcine CD4α, porcine CD8α, porcine CD25 (K231.3B2, cat.: MCA1736GA, Bio-Rad), FoxP3 (FJK-16s, cat.: 11-5773-82, eBioscience), and rat APC anti-mouse IgG1; NK cells panel including NKp46+ NK (CD3-CD8α+NKp46+) and NKp46- NK (CD3-CD8α+NKp46-) cells stained with porcine CD3, porcine CD8α, and porcine CD335 or NKp46 (VIM-KM1, cat.: MCA5972GA, Bio-Rad); Th1/Th17 cells panel including Th1 (CD4α+CD8α-IFN-γ+) and Th17 (CD4α+CD8α-IL17+) cells stained with porcine CD4α, porcine CD8α, porcine IFN-γ (P2G10, cat.: 561481, BD), and IL17 (eBio64DEC17, cat.: 17-7179-42, eBioscience); CTL/porcine gamma-delta T cells (CTL/γδT) panel including CTLs (CD3+ T cell receptor (TCR)γδCD8α+IFN-γ+), regulatory γδT cells (CD3+TCRγδ+CD8α+), and proinflammatory γδT cells (CD3+TCRγδ+CD8α-) stained with porcine CD3, porcine CD8α, porcine IFN-γ, porcine TCR1 δ (PGBL22A, cat.: WS0621S-100, Kingfischer Biotech), and rat APC anti-mouse IgG1. .. Cytokine immunoassay and ELISA for serum kynurenine and tryptophan The cytokine levels (IFN-α, IFN-γ, IL-1β, IL-4, IL-6, IL-8, IL-10, IL-12p40, and TNF-α) in the sera and BALF weremeasured using a ProcartaPlexTM Porcine Cytokine & Chemokine Panel 1 9-Plex Immunoassay (ThermoFisher Scientific, Vienna, Austria), according to the manufacturer’s instructions.
Article Title: Single-cell transcriptomics of bronchoalveolar lavage during PRRSV infection with different virulence
Article Snippet: .. According to the gating strategies suggested in former studies , – with modifications, the BALF cells were phenotypically classified into subpopulations as follows: monocyte/DC panel including alveolar macrophages (AMɸs and MHCII + CD172α + CD163 high ), monocyte-derived macrophages (moMɸs and MHCII + /CD172α + /CD163 int ), moDC (MHCII + CD172α + CD163 low ), cDC2 (MHCII + CD172α + CD163 - ), and cDC1 (MHCII + CD172α - CD163 - ) stained with porcine MHCII (myositis-specific antibody 3, cat.: WS0589S-100, Kingfischer Biotech), porcine CD163 (2A10/11, cat.: MCA2311GA, Bio-Rad), CD172α (Sirpα, 74-22-15, cat.: MCA6100PE, Bio-Rad), the Zombie Green live-dead fixable dye (cat.: 423112, BioLegend), rat adenomatous polyposis coli (APC) anti-mouse IgG1 (cat.: 406610, BioLegend), rat peridinin-chlorophyll-protein/cyanine 5.5 anti-mouse IgG2a (cat.: 407112, BioLegend); T cell panel including CD3 + T (CD3 + ), CD4 + T (CD3 + CD4α + CD8α - ), and CD8 + T (CD3 + CD4α - CD8α + ) cells stained with porcine CD3 (PPT3, cat.: MCA5951F, Bio-Rad), porcine CD4α (74-12-4, cat.: 561474, BD), and porcine CD8α (76-2-11, cat.: 559584, BD); T reg (CD4α + CD8α - CD25 + FoxP3 + ) cell panel stained with porcine CD4α, porcine CD8α, porcine CD25 (K231.3B2, cat.: MCA1736GA, Bio-Rad), FoxP3 (FJK-16s, cat.: 11-5773-82, eBioscience), and rat APC anti-mouse IgG1; NK cells panel including NKp46 + NK (CD3 - CD8α + NKp46 + ) and NKp46- NK (CD3 - CD8α + NKp46 - ) cells stained with porcine CD3, porcine CD8α, and porcine CD335 or NKp46 (VIM-KM1, cat.: MCA5972GA, Bio-Rad); Th1/Th17 cells panel including Th1 (CD4α + CD8α - IFN-γ + ) and Th17 (CD4α + CD8α - IL17 + ) cells stained with porcine CD4α, porcine CD8α, porcine IFN-γ (P2G10, cat.: 561481, BD), and IL17 (eBio64DEC17, cat.: 17-7179-42, eBioscience); CTL/porcine gamma-delta T cells (CTL/γδT) panel including CTLs (CD3 + T cell receptor (TCR)γδ- CD8α + IFN-γ + ), regulatory γδT cells (CD3 + TCRγδ + CD8α + ), and proinflammatory γδT cells (CD3 + TCRγδ + CD8α - ) stained with porcine CD3, porcine CD8α, porcine IFN-γ, porcine TCR1 δ (PGBL22A, cat.: WS0621S-100, Kingfischer Biotech), and rat APC anti-mouse IgG1. .. The cytokine levels (IFN-α, IFN-γ, IL-1β, IL-4, IL-6, IL-8, IL-10, IL-12p40, and TNF-α) in the sera and BALF were measured using a ProcartaPlexTM Porcine Cytokine & Chemokine Panel 1 9-Plex Immunoassay (ThermoFisher Scientific, Vienna, Austria), according to the manufacturer’s instructions.
|